Vet Med - Czech, 2026, 71(10):422-433 | DOI: 10.17221/76/2025-VETMED

Salmonella enterica isolates from poultry in North-Central Nigeria reveal multidrug-resistant patterns and risk of contamination to the human food chainOriginal Paper

AO Sanni ORCID...1,2, AH Jibril ORCID...3, A Jonker ORCID...1, FO Fasina ORCID...1,4
1 Department of Veterinary Tropical Diseases, University of Pretoria, Onderstepoort, South Africa
2 Agro-Processing, Productivity Enhancement and Livelihood Improvement Support (APPEALS) Project, Lokoja, Kogi State, Nigeria
3 Department of Veterinary Public Health and Preventive Medicine, Faculty of Veterinary Medicine, Usmanu Danfodiyo University, Sokoto, Sokoto State, Nigeria
4 Department of Agriculture and Animal Health, College of Agriculture and Environmental Sciences, University of South Africa (UNISA), Florida Park, Roodepoort, South Africa

Non-typhoidal (NT) salmonellosis is a major poultry-associated bacterial zoonosis. We undertook environmental sampling (poultry faeces and dust, n = 600) to evaluate the prevalence of NT Salmonella in poultry farms in North-Central Nigeria (NCN). Samples from five NCN states and Abuja were processed using standard bacterial culture and the invA-based PCR method, and isolates were tested against the 11 most used poultry antimicrobials by means of the Kirby–Bauer disk diffusion method. We measured inhibition zones using WHONET to classify resistance patterns. The overall prevalence rate was 18.7%, and prevalence rates in dust and faeces were 20.5% and 17.1%, respectively. Prevalence was lower in battery-caged birds, in flocks >1 000 birds, in older birds (>52 weeks, one year) and in layer farms. The odds of infection with NT Salmonella was ≥ twofold in younger birds. Isolates were most resistant to tetracycline (73.8%), nalidixic acid (59.5%) and sulphonamides (54.8%) and were most susceptible to ceftazidime (88.1%) and cefotaxime (78.6%). Single drug-resistant, multidrug-resistant, extensively drug-resistant and pandrug-resistant isolates were obtained, indicating abuse of antimicrobials in the poultry industry. Stricter control of access to antimicrobials will mitigate antimicrobial resistant pathogens, and inaction will complicate antimicrobial resistance in the human food chain with subsequent health and economic implications.

Keywords: antibacterial susceptibility; environmental contamination; food safety; livestock pathogens; zoonotic bacteria

Received: October 1, 2025; Revised: June 11, 2026; Accepted: June 15, 2026; Prepublished online: October 14, 2026; Published: October 15, 2026  Show citation

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Sanni A, Jibril A, Jonker A, Fasina F. Salmonella enterica isolates from poultry in North-Central Nigeria reveal multidrug-resistant patterns and risk of contamination to the human food chain. Veterinární medicína. 2026;71(10):422-433. doi: 10.17221/76/2025-VETMED.
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References

  1. Adebowale O, Makanjuola M, Bankole N, Olasoju M, Alamu A, Kperegbeyi E, Oladejo O, Fasanmi O, Adeyemo O, Fasina FO. Multi-drug resistant Escherichia coli, biosecurity and anti-microbial use in live bird markets, Abeokuta, Nigeria. Antibiotics (Basel). 2022 Feb 16;11(2):253. Go to original source... Go to PubMed...
  2. Adebowale OO, Adeyemo FA, Bankole N, Olasoju M, Adesokan HK, Fasanmi O, Adeyemo O, Awoyomi O, Kehinde O, Fasina FO. Farmers' perceptions and drivers of antimicrobial use and abuse in commercial pig production, Ogun State, Nigeria. Int J Environ Res Public Health. 2020 May 20;17(10):3579. Go to original source...
  3. Adene DF, Oguntade AE. Poultry sector country review - Nigeria [Internet]. Rome: FAO Animal Production and Health Division; 2008 Apr [cited 2026 Feb 8]. 95 p. Available from: www.fao.org/3/ai352e/ai352e.pdf.
  4. Adesokan HK, Akanbi IO, Akanbi IM, Obaweda RA. Pattern of antimicrobial usage in livestock animals in south-western Nigeria: The need for alternative plans. Onderstepoort J Vet Res. 2015 Apr 16;82(1):816. Go to original source... Go to PubMed...
  5. Akinyemi KO, Ajoseh SO, Fakorede CO. A systemic review of literatures on human Salmonella enterica serovars in Nigeria (1999-2018). J Infect Dev Ctries. 2021 Sep 30;15(9):1222-35. Go to original source... Go to PubMed...
  6. Ao TT, Feasey NA, Gordon MA, Keddy KH, Angulo FJ, Crump JA. Global burden of invasive nontyphoidal Salmonella disease, 2010. Emerg Infect Dis. 2015 Jun;21(6):941-9. Go to original source... Go to PubMed...
  7. Batz MB, Hoffmann S, Morris JG Jr. Ranking the risks: The 10 pathogen-food combinations with the greatest burden on public health [Internet]. Gainesville (FL): Emerging Pathogens Institute, University of Florida; 2011 Apr [cited 2025 Oct 18]. 70 p. Available from: archives.indianapolis.iu.edu/items/19646b57-9efa-491d-b85c-0c03fe 922f8b.
  8. Batz MB, Hoffmann S, Morris JG Jr. Ranking the disease burden of 14 pathogens in food sources in the United States using attribution data from outbreak investigations and expert elicitation. J Food Prot. 2012 Jul;75(7):1278-91. Erratum in: J Food Prot. 2012 Aug;75(8):1366. Go to original source... Go to PubMed...
  9. Chinivasagam HN, Tran T, Maddock L, Gale A, Blackall PJ. Mechanically ventilated broiler sheds: A possible source of aerosolized Salmonella, Campylobacter, and Escherichia coli. Appl Environ Microbiol. 2009 Dec;75(23):7417-25. Go to original source... Go to PubMed...
  10. CLSI - Clinical and Laboratory Standards Institute. Performance standards for antimicrobial susceptibility testing. 30th ed. CLSI supplement M100. Wayne (PA): CLSI; 2020. p. 32-41.
  11. CLSI - Clinical and Laboratory Standards Institute. Performance standards for antimicrobial susceptibility testing. 32nd ed. CLSI supplement M100. Wayne (PA): CLSI; 2022.
  12. Dean AG, Sullivan KM, Soe MM. OpenEpi: Open source epidemiologic statistics for public health [computer software]. Version 3.03a. 2013. Available from: www.OpenEpi.com.
  13. Fagbamila IO, Barco L, Mancin M, Kwaga J, Ngulukun SS, Zavagnin P, Lettini AA, Lorenzetto M, Abdu PA, Kabir J, Umoh J, Ricci A, Muhammad M. Salmonella serovars and their distribution in Nigerian commercial chicken layer farms. PLoS One. 2017 Mar 9;12(3):e0173097. Go to original source... Go to PubMed...
  14. Feasey NA, Dougan G, Kingsley RA, Heyderman RS, Gordon MA. Invasive non-typhoidal salmonella disease: An emerging and neglected tropical disease in Africa. Lancet. 2012 Jun 30;379(9835):2489-99. Go to original source... Go to PubMed...
  15. Gal-Mor O, Boyle EC, Grassl GA. Same species, different diseases: How and why typhoidal and non-typhoidal Salmonella enterica serovars differ. Front Microbiol. 2014 Aug 4;5:391. Go to original source...
  16. Gebeyehu DT, Bekele D, Mulate B, Gugsa G, Tintagu T. Knowledge, attitude and practice of animal producers towards antimicrobial use and antimicrobial resistance in Oromia zone, north eastern Ethiopia. PLoS One. 2021 May 12;16(5):e0251596. Go to original source... Go to PubMed...
  17. Gemeda BA, Amenu K, Magnusson U, Dohoo I, Hallenberg GS, Alemayehu G, Desta H, Wieland B. Antimicrobial use in extensive smallholder livestock farming systems in Ethiopia: Knowledge, attitudes, and practices of livestock keepers. Front Vet Sci. 2020 Feb 26;7:55. Go to original source... Go to PubMed...
  18. Ipara BO, Otieno DO, Nyikal RA, Makokha SN. The role of unregulated chicken marketing practices on the frequency of Newcastle disease outbreaks in Kenya. Poult Sci. 2019 Dec 1;98(12):6356-66. Go to original source... Go to PubMed...
  19. ISO - International Organization for Standardisation. ISO 6579-1:2017/AMD 1:2022: Microbiology of the food chain - Horizontal method for the detection, enumeration and serotyping of Salmonella. Part 1: Detection of Salmonella spp. [Internet]. Geneva: ISO; 2022 Feb [cited 2024 Dec 15]. 50 p. Available from: www.iso.org/standard/56712.html.
  20. Jibril AH, Okeke IN, Dalsgaard A, Kudirkiene E, Akinlabi OC, Bello MB, Olsen JE. Prevalence and risk factors of Salmonella in commercial poultry farms in Nigeria. PLoS One. 2020 Sep 23;15(9):e0238190. Go to original source... Go to PubMed...
  21. Kirk MD, Pires SM, Black RE, Caipo M, Crump JA, Devleesschauwer B, Dopfer D, Fazil A, Fischer-Walker CL, Hald T, Hall AJ, Keddy KH, Lake RJ, Lanata CF, Torgerson PR, Havelaar AH, Angulo FJ. World Health Organization estimates of the global and regional disease burden of 22 foodborne bacterial, protozoal, and viral diseases, 2010: A data synthesis. PLoS Med. 2015 Dec 3;12(12):e1001921. Erratum in: PLoS Med. 2015 Dec 23;12(12): e1001940. Go to original source... Go to PubMed...
  22. Magiorakos AP, Srinivasan A, Carey RB, Carmeli Y, Falagas ME, Giske CG, Harbarth S, Hindler JF, Kahlmeter G, Olsson-Liljequist B, Paterson DL, Rice LB, Stelling J, Struelens MJ, Vatopoulos A, Weber JT, Monnet DL. Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: An international expert proposal for interim standard definitions for acquired resistance. Clin Microbiol Infect. 2012 Mar;18(3):268-81. Go to original source...
  23. Martin D, Austin H. An efficient program for computing conditional maximum likelihood estimates and exact confidence limits for a common odds ratio. Epidemiology. 1991 Sep;2(5):359-62. Go to original source...
  24. Mdegela RH, Mwakapeje ER, Rubegwa B, Gebeyehu DT, Niyigena S, Msambichaka V, Nonga HE, Antoine-Moussiaux N, Fasina FO. Antimicrobial use, residues, resistance and governance in the food and agriculture sectors, Tanzania. Antibiotics (Basel). 2021 Apr 16;10(4):454. Go to original source...
  25. Odey TOJ, Tanimowo WO, Afolabi KO, Jahid IK, Reuben RC. Antimicrobial use and resistance in food animal production: Food safety and associated concerns in Sub-Saharan Africa. Int Microbiol. 2024 Feb;27(1):1-23. Go to original source... Go to PubMed...
  26. Oloso NO, Adeyemo IA, van Heerden H, Fasanmi OG, Fasina FO. Antimicrobial drug administration and antimicrobial resistance of Salmonella isolates originating from the broiler production value chain in Nigeria. Antibiotics (Basel). 2019 Jun 6;8(2):75. Go to original source... Go to PubMed...
  27. Oloso NO, Smith PW, Adeyemo IA, Odetokun IA, Isola TO, Fasanmi OG, Fasina FO. The broiler chicken production value chain in Nigeria between needs and policy: Situation analysis, action plan for development, and lessons for other developing countries. CAB Rev. 2020 May;15:020. Go to original source...
  28. Omolase CO, Adeleke OE, Afolabi AO, Afolabi OT. Self medication amongst general outpatients in a Nigerian community hospital. Ann Ib Postgrad Med. 2007 Dec;5(2):64-7. Go to original source... Go to PubMed...
  29. Paintsil EK, Ofori LA, Akenten CW, Fosu D, Ofori S, Lamshoft M, May J, Danso KO, Krumkamp R, Dekker D. Antimicrobial usage in commercial and domestic poultry farming in two communities in the Ashanti Region of Ghana. Antibiotics (Basel). 2021 Jun 30;10(7):800. Go to original source... Go to PubMed...
  30. Pal A, Bailey MA, Talorico AA, Krehling JT, Macklin KS, Price SB, Buhr RJ, Bourassa DV. Impact of poultry litter Salmonella levels and moisture on transfer of Salmonella through associated in vitro generated dust. Poult Sci. 2021 Aug;100(8):101236. Go to original source... Go to PubMed...
  31. Pal A, Jackson AP, Urrutia A, Macklin KS, Price SB, Buhr RJ, Bourassa DV. Research note: Bacterial composition of settled dust during growout of broiler chickens. Poult Sci. 2022 Feb;101(2):101602. Go to original source... Go to PubMed...
  32. RADARR Africa. Poultry farmers calling to government to crackdown unregulated poultry hatcheries [Internet]. 2022 Oct 26 [cited 2024 Mar 3]. Available from: radarr.africa/poultry-farmers-calling-to-government-to-crackdown-unregulated-poultry-hatcheries/.
  33. Rahn K, De Grandis SA, Clarke RC, McEwen SA, Galan JE, Ginocchio C, Curtiss R 3rd, Gyles CL. Amplification of an invA gene sequence of Salmonella typhimurium by polymerase chain reaction as a specific method of detection of Salmonella. Mol Cell Probes. 1992 Aug;6(4):271-9. Go to original source... Go to PubMed...
  34. Ramtahal MA, Amoako DG, Akebe ALK, Somboro AM, Bester LA, Essack SY. A public health insight into Salmonella in poultry in Africa: A review of the past decade: 2010-2020. Microb Drug Resist. 2022 Jun;28(6):710-33. Go to original source... Go to PubMed...
  35. Samper-Cativiela C, Prieto ME, Collado S, De Frutos C, Branscum AJ, Saez JL, Alvarez J. Risk factors for Salmonella detection in commercial layer flocks in Spain. Animals (Basel). 2023 Oct 12;13(20):3181. Go to original source... Go to PubMed...
  36. Sanni AO, Onyango J, Usman A, Abdulkarim LO, Jonker A, Fasina FO. Risk factors for persistent infection of non-typhoidal Salmonella in poultry farms, North Central Nigeria. Antibiotics (Basel). 2022 Aug 18;11(8):1121. Go to original source... Go to PubMed...
  37. Smith SI, Seriki A, Ajayi A. Typhoidal and non-typhoidal Salmonella infections in Africa. Eur J Clin Microbiol Infect Dis. 2016 Dec;35(12):1913-22. Go to original source... Go to PubMed...
  38. Sonaiya EB, Oguntade EA, Adesina AA. Commercial poultry success stories in Nigeria: Drivers, challenges, and lessons [Internet]. FARA Research Report, Vol. 6, No. 11. Accra: Forum for Agricultural Research in Africa; 2022 [cited 2024 Feb 15]. 51 p. Available from: research4agrinnovation.org/publications/page/3/.
  39. Uzochukwu BS, Onwujekwe OE. Socio-economic differences and health seeking behaviour for the diagnosis and treatment of malaria: A case study of four local government areas operating the Bamako initiative programme in south-east Nigeria. Int J Equity Health. 2004 Jun 17;3(1):6. Go to original source... Go to PubMed...
  40. Van Hoorebeke S, Van Immerseel F, Haesebrouck F, Ducatelle R, Dewulf J. The influence of the housing system on Salmonella infections in laying hens: A review. Zoonoses Public Health. 2011 Aug;58(5):304-11. Go to original source... Go to PubMed...
  41. Waghamare RN, Paturkar AM, Vaidya VM, Zende RJ, Dubal ZN, Dwivedi A, Gaikwad RV. Phenotypic and genotypic drug resistance profile of Salmonella serovars isolated from poultry farm and processing units located in and around Mumbai city, India. Vet World. 2018 Dec;11(12):1682-8. Go to original source... Go to PubMed...
  42. Wang J, Vaddu S, Bhumanapalli S, Mishra A, Applegate T, Singh M, Thippareddi H. A systematic review and meta-analysis of the sources of Salmonella in poultry production (pre-harvest) and their relative contributions to the microbial risk of poultry meat. Poult Sci. 2023 May;102(5):102566. Go to original source... Go to PubMed...
  43. Wegbom AI, Edet CK, Raimi O, Fagbamigbe AF, Kiri VA. Self-medication practices and associated factors in the prevention and/or treatment of COVID-19 virus: A population-based survey in Nigeria. Front Public Health. 2021 Jun 4;9:606801. Go to original source... Go to PubMed...
  44. WHO - World Health Organisation. Salmonella (non-typhoidal) [Internet]. Geneva: WHO; 2018 Dec [cited 2024 Feb 23]. Available from: www.who.int/news-room/fact-sheets/detail/Salmonella-(non-typhoidal).
  45. WHO - World Health Organisation. The burden of foodborne diseases in the WHO European Region [Internet]. Copenhagen: WHO Regional Office for Europe; 2017 Aug [cited 2025 Mar 13]. 36 p. Available from: iris.who.int/items/01ecd244-af0b-42fd-9e83-e9045f66cbb7.
  46. WHO - World Health Organisation. WHO estimates of the global burden of foodborne diseases: Foodborne Disease Burden Epidemiology Reference Group 2007-2015 [Internet]. Geneva: WHO; 2015 Dec [cited 2022 Sep 21]. 265 p. Available from: apps.who.int/iris/bitstream/handle/10665/199350/9789241565165_eng.pdf.

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